Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA

Yang Liu, Lin Yang, Yi Zhang, Jin Wang, Jennifer Altreuter, Aashna Jhaveri, Cheryl J. Wong, Li Song, Jingxin Fu, Len Taing, Sudheshna Bodapati, Avinash Sahu, Collin Tokheim, Zexian Zeng, Gali Bai, Ming Tang, Xintao Qiu, Henry W. Long, Franziska Michor, X. Shirley Liu

Published: 2023-06-29 DOI: 10.1038/s41596-023-00841-8

RNA-seq

Tumor immunity

Computational analysis

RIMA

Immunotherapy

AI 解读

Supplementary information

Supplementary Software 1

Source code of the RIMA pipeline

Efficient and safe single-cell cloning of human pluripotent stem cells using the CEPT cocktail

Profiling native pulmonary basement membrane stiffness using atomic force microscopy

Genetic circuit design automation with Cello 2.0

Synthesis of siRNA nanoparticles to silence plaque-destabilizing gene in atherosclerotic lesional macrophages

Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2)

A practical guide to scanning light-field microscopy with digital adaptive optics

Effective high-throughput isolation of fully human antibodies targeting infectious pathogens

Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments

MOF-derived nanoporous carbons with diverse tunable nanoarchitectures

Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease

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Supplementary information

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Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA

Supplementary information

Supplementary Software 1

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